After Payments2Us 11.1 release, automatic reconciliation is available for Stripe Payment Gateway as well.
The Stripe Reconciliation Processor helps keep Stripe and Salesforce in sync. If a payment is successfully processed in Stripe but the related Payment Txn is not updated in Salesforce (for example, due to a webhook issue, or service interruption), the processor automatically checks for the recent Stripe transactions and updates the corresponding Payment Txns in Payments2Us when a successful payment is confirmed.
It supports Credit Card and Direct Debit Payments reconciliation. The process runs automatically after the daily Recurring Payments Processor.